PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 412aa    MW: 46582.3 Da    PI: 4.3276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010307genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-194897255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Cla010307 48 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 97
               789******.7*********33....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.37E-3247104No hitNo description
PROSITE profilePS5103219.59948105IPR001471AP2/ERF domain
PfamPF008471.0E-134897IPR001471AP2/ERF domain
SMARTSM003801.4E-3548111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2748104IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1948105IPR016177DNA-binding domain
PRINTSPR003676.1E-84960IPR001471AP2/ERF domain
PRINTSPR003676.1E-87187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARKRKAVEG VEDKSSSEGG AMAWDEMVKE AAATAAALGG GVRRARKRFV GVRQRPSGRW  60
VAEIKDTIQK IRVWLGTFDT AEEAARAYDE AACLLRGSNT RTNFWPCSPL SSSSPALPSK  120
ITNLLIQRLN ARNNNSSINN LPNNQQEQKH QPAQERMLHP NEHESREELA TTCFTDRVLS  180
DLLNDQEVFP TNPNIEEISR SFESCLTEKD ESDSGEMYSS NWMGMTQMNN SDGGDERNGL  240
VQQEEEEEES NVLDFHFLDN IGPPCYYSPF EIAEEIGEPM EGGEGSEDEP SSMLREAMKR  300
MKYERKISAS LYAFNGIPEC LKLKLGEGSE NERGRSNSEL ITSLRKACDR RRSDEEKVEE  360
EEEEEEEEEE YQKKMEGDKE ETCSAEMKSF SSTEVDLSIW SSLDLQPICF VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1347104159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656001.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
TrEMBLA0A0A0KSB50.0A0A0A0KSB5_CUCSA; Uncharacterized protein
STRINGPOPTR_0017s12370.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11